Publications (please select year or group)

  1. Zhang, X., Zou, Q., Rodriguez-Paton, A., Zeng, X. (2019). Meta-path methods for prioritizing candidate disease miRNAs. IEEE/ACM Trans Comput Biol Bioinform 16: 283-291. doi: 10.1109/tcbb.2017.2776280.
  2. Bernardini, A., Cuesta, T., Tomas, A., Bengoechea, J.A., Martinez, J.L., Sanchez, M.B. (2019). The intrinsic resistome of Klebsiella pneumoniae. Int J Antimicrob Agents 53: 29-33. doi: 10.1016/j.ijantimicag.2018.09.012.
  3. de Lorenzo, V., Marliere, P. (2019). The Synthetic Microbiology Caucus: a fresh channel for exploring new ideas, challenging conventional wisdom and fostering community projects. Microb Biotechnol 12: 3-4. doi: 10.1111/1751-7915.13331.
  4. Akkaya, O., Nikel, P.I., Perez-Pantoja, D., de Lorenzo, V. (2019). Evolving metabolism of 2,4-dinitrotoluene triggers SOS-independent diversification of host cells. Environ Microbiol 21: 314-326. doi: 10.1111/1462-2920.14459.
  5. Aparicio, T., de Lorenzo, V., Martinez-Garcia, E. (2019). Improved thermotolerance of genome-reduced Pseudomonas putida EM42 enables effective functioning of the PL /cI857 system. Biotechnol J 14: e1800483. doi: 10.1002/biot.201800483.
  6. Ruppe, E., Ghozlane, A., Tap, J., Pons, N., Alvarez, A.S., Maziers, N., Cuesta, T., Hernando-Amado, S., Clares, I., Martinez, J.L., Coque, T.M., Baquero, F., Lanza, V.F., Maiz, L., Goulenok, T., de Lastours, V., Amor, N., Fantin, B., Wieder, I., Andremont, A., van Schaik, W., Rogers, M., Zhang, X., Willems, R.J.L., de Brevern, A.G., Batto, J.M., Blottiere, H.M., Leonard, P., Lejard, V., Letur, A., Levenez, F., Weiszer, K., Haimet, F., Dore, J., Kennedy, S.P., Ehrlich, S.D. (2019). Prediction of the intestinal resistome by a three-dimensional structure-based method. Nat Microbiol 4: 112-123. doi: 10.1038/s41564-018-0292-6.
  7. de Lorenzo, V., Couto, J. (2019). The important versus the exciting: reining contradictions in contemporary biotechnology. Microb Biotechnol 12: 32-34. doi: 10.1111/1751-7915.13348.
  8. Hernandez-Gonzalez, M., Bravo-Plaza, I., de Los Rios, V., Pinar, M., Pantazopoulou, A., Penalva, M.A. (2019). COPI localizes to the early Golgi in Aspergillus nidulans. Fungal Genet Biol 123: 78-86. doi: 10.1016/j.fgb.2018.12.003.
  9. Del Campo, R., Martinez-Garcia, L., Sanchez-Diaz, A.M., Baquero, F. (2019). Biology of hand-to-hand bacterial transmission. Microbiol Spectr 7. doi: 10.1128/microbiolspec.MTBP-0011-2016.
  10. Amann, R.I., Baichoo, S., Blencowe, B.J., Bork, P., Borodovsky, M., Brooksbank, C., Chain, P.S.G., Colwell, R.R., Daffonchio, D.G., Danchin, A., de Lorenzo, V., Dorrestein, P.C., Finn, R.D., Fraser, C.M., Gilbert, J.A., Hallam, S.J., Hugenholtz, P., Ioannidis, J.P.A., Jansson, J.K., Kim, J.F., Klenk, H.P., Klotz, M.G., Knight, R., Konstantinidis, K.T., Kyrpides, N.C., Mason, C.E., McHardy, A.C., Meyer, F., Ouzounis, C.A., Patrinos, A.A.N., Podar, M., Pollard, K.S., Ravel, J., Munoz, A.R., Roberts, R.J., Rossello-Mora, R., Sansone, S.A., Schloss, P.D., Schriml, L.M., Setubal, J.C., Sorek, R., Stevens, R.L., Tiedje, J.M., Turjanski, A., Tyson, G.W., Ussery, D.W., Weinstock, G.M., White, O., Whitman, W.B., Xenarios, I. (2019). Toward unrestricted use of public genomic data. Science 363: 350-352. doi: 10.1126/science.aaw1280.
  11. Kim, J., Goni-Moreno, A., Calles, B., de Lorenzo, V. (2019). Spatial organization of the gene expression hardware in Pseudomonas putida. Environ Microbiol. doi: 10.1111/1462-2920.14544.
  12. Goni-Moreno, A., de la Cruz, F., Rodriguez-Paton, A., Amos, M. (2019). Dynamical task switching in cellular computers. Life (Basel) 9. doi: 10.3390/life9010014.
  13. Campos, M., Capilla, R., Naya, F., Futami, R., Coque, T., Moya, A., Fernandez-Lanza, V., Canton, R., Sempere, J.M., Llorens, C., Baquero, F. (2019). Simulating multilevel dynamics of antimicrobial resistance in a membrane computing model. MBio 10. doi: 10.1128/mBio.02460-18.
  14. Martinez, J.L., Bosco-Garate, I., Souza-Gallardo, L.M., Mendez, J.D., Juarez-Oropeza, M.A., Roman-Ramos, R., Ferat-Osorio, E. (2019). Effect of preoperative administration of oral arginine and glutamine in patients with enterocutaneous fistula submitted to definitive surgery: A prospective randomized trial. J Gastrointest Surg. doi: 10.1007/s11605-018-04099-4.
  15. Song, T., Pan, L., Wu, T., Zheng, P., Wong, M.L.D., Rodriguez-Paton, A. (2019). Spiking neural P systems with learning functions. IEEE Trans Nanobioscience. doi: 10.1109/tnb.2019.2896981.
  16. Ishchuk, O.P., Martinez, J.L., Petranovic, D. (2019). Improving the production of cofactor-containing proteins: Production of human hemoglobin in yeast. Methods Mol Biol 1923: 243-264. doi: 10.1007/978-1-4939-9024-5_11.
  17. Liu, X., Hong, Z., Liu, J., Lin, Y., Rodriguez-Paton, A., Zou, Q., Zeng, X. (2019). Computational methods for identifying the critical nodes in biological networks. Brief Bioinform. doi: 10.1093/bib/bbz011.
  18. Roman, E., Coman, I., Prieto, D., Alonso-Monge, R., Pla, J. (2019). Implementation of a CRISPR-based system for gene regulation in Candida albicans. mSphere 4. doi: 10.1128/mSphere.00001-19.
  19. Boel, G., Danot, O., de Lorenzo, V., Danchin, A. (2019). Omnipresent Maxwell's demons orchestrate information management in living cells. Microb Biotechnol 12: 210-242. doi: 10.1111/1751-7915.13378.
  20. Flecha-Velazquez, K., Fahey, T.D., Martinez, J.L., Lopez-Taylor, J.R., Rivera, M.A. (2019). KCNA4 gene variant is auxiliary in endurance running performance level. Int J Sports Med. doi: 10.1055/a-0824-5394.
  21. Garcia, R., Pulido, V., Orellana-Muñoz, S., Nombela, C., Vazquez de Aldana, C.R., Rodriguez-Peña, J.M., Arroyo, J. (2019). Signalling through the yeast MAPK Cell Wall Integrity pathway controls P-body assembly upon cell wall stress. Sci Rep 9: 3186. doi: 10.1038/s41598-019-40112-9.
  22. Mahnert, A., Moissl-Eichinger, C., Zojer, M., Bogumil, D., Mizrahi, I., Rattei, T., Martinez, J.L., Berg, G. (2019). Man-made microbial resistances in built environments. Nat Commun 10: 968. doi: 10.1038/s41467-019-08864-0.
Actualised 14/03/2019
© S2017/BMD-3691 InGEMICS-CM