Publications (please select year or group)

  1. Baquero, F., Levin, B.R., 2021. Proximate and ultimate causes of the bactericidal action of antibiotics. Nat Rev Microbiol 19,123–132. doi: 10.1038/s41579-020-00443-1
  2. Akkaya, Ö., Aparicio, T., Pérez-Pantoja, D., Lorenzo, V.d. (2021). The faulty SOS response of Pseudomonas putida KT2440 stems from an inefficient RecA-LexA interplay. Environmental Microbiology 23, 1608-1619. doi: 10.1111/1462-2920.15384
  3. Alonso-Monge, R., Gresnigt, M.S., Román, E., Hube, B., Pla, J. (2021). Candida albicans colonization of the gastrointestinal tract: A double-edged sword. PLoS pathogens 17, e1009710. doi: 10.1371/journal.ppat.1009710
  4. Alonso-Monge, R., et al. (2021). Identification of Clinical Isolates of Candida albicans with Increased Fitness in Colonization of the Murine Gut. Journal of Fungi 7, 695. doi: 10.3390/jof7090695
  5. Al-ramahi, Y., et al. (2021). ssDNA recombineering boosts in vivo evolution of nanobodies displayed on bacterial surfaces. Communications Biology 4, 1169. doi: 10.1038/s42003-021-02702-0
  6. Apura, P., Lorenzo, V.d., Arraiano, C.M., Martínez-García, E., Viegas, S.C. (2021). Ribonucleases control distinct traits of Pseudomonas putida lifestyle. Environmental Microbiology 23, 174-189. doi: 10.1111/1462-2920.15291
  7. Arce-Rodríguez, A., Benedetti, I., Borrero-de Acuña, J.M., Silva-Rocha, R., de Lorenzo, V. (2021). Standardization of inducer-activated broad host range expression modules: debugging and refactoring an alkane-responsive AlkS/PalkB device. Synthetic Biology 6, ysab030. doi: 10.1093/synbio/ysab030
  8. Arce-Rodríguez, A., et al. (2021). Low CyaA expression and anti-cooperative binding of cAMP to CRP frames the scope of the cognate regulon of Pseudomonas putida. Environmental Microbiology 23, 1732-1749. doi: 10.1111/1462-2920.15422
  9. Baquero, F. (2021). Threats of antibiotic resistance: an obliged reappraisal. International Microbiology, 1-8. doi: 10.1007/s10123-021-00184-y
  10. Baquero, F., Coque, T.M., Galán, J.C., Martinez, J.L. (2021). The Origin of Niches and Species in the Bacterial World. Frontiers in Microbiology 12, 657986. doi: 10.3389/fmicb.2021.657986
  11. Baquero, F., et al. (2021). Allogenous Selection of Mutational Collateral Resistance: Old Drugs Select for New Resistance Within Antibiotic Families. Frontiers in Microbiology 12, 757833. doi: 10.3389/fmicb.2021.757833
  12. Baquero, F., et al. (2021). Epidermis as a Platform for Bacterial Transmission. Frontiers in Immunology 12, 774018. doi: 10.3389/fimmu.2021.774018
  13. Bravo-Plaza, I., Hernández-González, M., Peñalva, M.Á. (2021). Comment on Dimou et al. Profile of Membrane Cargo Trafficking Proteins and Transporters Expressed under N Source Derepressing Conditions in Aspergillus nidulans. J. Fungi 2021, 7, 560. Journal of Fungi 7, 1037. doi: 10.3390/jof7121037
  14. Coronas-Serna, J.M., del Val, E., Kagan, J.C., Molina, M., Cid, V.J. (2021). Heterologous Expression and Assembly of Human TLR Signaling Components in Saccharomyces cerevisiae. Biomolecules 11, 1737. doi: 10.3390/biom11111737
  15. de Lorenzo, V., Krasnogor, N., Schmidt, M. (2021). For the sake of the Bioeconomy: define what a Synthetic Biology Chassis is! New Biotechnology 60, 44-51. doi: 10.1016/j.nbt.2020.08.004
  16. Durante-Rodríguez, G., Páez-Espino, D., de Lorenzo, V. (2021). A Bifan Motif Shaped by ArsR1, ArsR2, and Their Cognate Promoters Frames Arsenic Tolerance of Pseudomonas putida. Frontiers in Microbiology 12, 641440. doi: 10.3389/fmicb.2021.641440
  17. Dvořák, P., Alvarez-Carreño, C., Ciordia, S., Paradela, A., de Lorenzo, V. (2021). An updated structural model of the A domain of the Pseudomonas putida XylR regulator poses an atypical interplay with aromatic effectors. Environmental Microbiology 23, 4418-4433. doi: 10.1111/1462-2920.15628
  18. Espeso, D.R., Martínez-García, E., de Lorenzo, V. (2021). Quantitative assessment of morphological traits of planktonic bacterial aggregates. Water Research 188, 116468. doi: 10.1016/j.watres.2020.116468
  19. Fraile, S., et al. (2021). Engineering Tropism of Pseudomonas putida toward Target Surfaces through Ectopic Display of Recombinant Nanobodies. ACS Synthetic Biology 10, 2049-2059. doi: 10.1021/acssynbio.1c00227
  20. Gil-Gil, T., Ochoa-Sánchez, L.E., Baquero, F., Martínez, J.L. (2021). Antibiotic resistance: Time of synthesis in a post-genomic age. Computational and Structural Biotechnology Journal 19, 3110-3124. doi: 10.1016/j.csbj.2021.05.034
  21. González-Rubio, G., Sellers-Moya, Á., Martín, H., Molina, M. (2021). Differential Role of Threonine and Tyrosine Phosphorylation in the Activation and Activity of the Yeast MAPK Slt2. International Journal of Molecular Sciences 22, 1110. doi: 10.3390/ijms22031110
  22. González-Rubio, G., Sellers-Moya, Á., Martín, H., Molina, M. (2021). A walk-through MAPK structure and functionality with the 30-year-old yeast MAPK Slt2. International Microbiology 24, 531-543. doi: 10.1007/s10123-021-00183-z
  23. Kim, J., Goñi-Moreno, A., de Lorenzo, V. (2021). Subcellular Architecture of the xyl Gene Expression Flow of the TOL Catabolic Plasmid of Pseudomonas putida mt-2. mBio 12, e03685-03620. doi: 10.1128/mBio.03685-20
  24. Kim, J., Silva-Rocha, R., de Lorenzo, V. (2021). Picking the right metaphors for addressing microbial systems: economic theory helps understanding biological complexity. International Microbiology. doi: 10.1007/s10123-021-00194-w
  25. Laborda, P., Sanz-García, F., Hernando-Amado, S., Martínez, J.L. (2021). Pseudomonas aeruginosa: an antibiotic resilient pathogen with environmental origin. Current Opinion in Microbiology 64, 125-132. doi: 10.1016/j.mib.2021.09.010
  26. Luna, S., et al. (2021). A global analysis of the reconstitution of PTEN function by translational readthrough of PTEN pathogenic premature termination codons. Human Mutation 42, 551-566. doi: 10.1002/humu.24186
  27. Nikel, P.I., et al. (2021). Reconfiguration of metabolic fluxes in Pseudomonas putida as a response to sub-lethal oxidative stress. The ISME Journal 15, 1751-1766. doi: 10.1038/s41396-020-00884-9
  28. Pérez-Pantoja, D., Nikel, P.I., Chavarría, M., Lorenzo, V.d. (2021). Transcriptional control of 2,4-dinitrotoluene degradation in Burkholderia sp. R34 bears a regulatory patch that eases pathway evolution. Environmental Microbiology 23, 2522-2531. doi: 10.1111/1462-2920.15472
  29. Perianez-Rodriguez, J., et al. (2021). An auxin-regulable oscillatory circuit drives the root clock in Arabidopsis. Science Advances 7, eabd4722. doi: 10.1126/sciadv.abd4722
  30. Pinar, M., Peñalva, M.A. (2021). The fungal RABOME: RAB GTPases acting in the endocytic and exocytic pathways of Aspergillus nidulans (with excursions to other filamentous fungi). Molecular Microbiology 116, 53-70. doi: 10.1111/mmi.14716
  31. Ruano-Gallego, D., et al. (2021). Type III secretion system effectors form robust and flexible intracellular virulence networks. Science (New York, N.Y.) 371, eabc9531. doi: 10.1126/science.abc9531
  32. Sanz-García, F., et al. (2021). Coming from the Wild: Multidrug Resistant Opportunistic Pathogens Presenting a Primary, Not Human-Linked, Environmental Habitat. International Journal of Molecular Sciences 22, 8080. doi: 10.3390/ijms22158080
  33. Silbert, J., Lorenzo, V.d., Aparicio, T. (2021). Refactoring the Conjugation Machinery of Promiscuous Plasmid RP4 into a Device for Conversion of Gram-Negative Isolates to Hfr Strains. ACS Synthetic Biology 10, 690-697. doi: 10.1021/acssynbio.0c00611
  34. Sircaik, S., et al. (2021). The protein kinase Ire1 impacts pathogenicity of Candida albicans by regulating homeostatic adaptation to endoplasmic reticulum stress. Cellular Microbiology 23, e13307. doi: 10.1111/cmi.13307
  35. Tas, H., Goñi-Moreno, Á., Lorenzo, V.d. (2021). A Standardized Inverter Package Borne by Broad Host Range Plasmids for Genetic Circuit Design in Gram-Negative Bacteria. ACS Synthetic Biology 10, 213-217. doi: 10.1021/acssynbio.0c00529
  36. Tas, H., Grozinger, L., Stoof, R., de Lorenzo, V., Goñi-Moreno, Á. (2021). Contextual dependencies expand the re-usability of genetic inverters. Nature Communications 12, 355. doi: 10.1038/s41467-020-20656-5
  37. Tedim, A.P., et al. (2021). Fitness cost of vancomycin-resistant Enterococcus faecium plasmids associated with hospital infection outbreaks. Journal of Antimicrobial Chemotherapy 76, 2757-2764. doi: 10.1093/jac/dkab249
  38. van Hal, S.J., et al. (2021). The global dissemination of hospital clones of Enterococcus faecium. Genome Medicine 13, 52. doi: 10.1186/s13073-021-00868-0
  39. Vico, S.H., Prieto, D., Monge, R.A., Román, E., Pla, J. (2021). The Glyoxylate Cycle Is Involved in White-Opaque Switching in Candida albicans. Journal of Fungi 7, 502. doi: 10.3390/jof7070502
Actualised 14/01/2022
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