Publications (please select year or group)

  1. Millares, L., Pérez-Brocal, V., Ferrari, R., Gallego, M., Pomares, X., García-Núñez, M., Montón, C., Capilla, S., Monsó, E., Moya, A. (2015). Functional Metagenomics of the Bronchial Microbiome in COPD. PLoS One 10, e0144448. doi: 10.1371/journal.pone.0144448
  2. Perez-Brocal, V., Andremont, A., y Moya, A. (2018) Isolation in small populations of Wayampi Amerindians promotes endemicity and homogenisation of their faecal virome, but its distribution is not entirely random. FEMS Microbiol Ecol 94. doi: 10.1093/femsec/fix184
  3. Rosas, T., Garcia-Ferris, C., Dominguez-Santos, R., Llop, P., Latorre, A., y Moya, A. (2018) Rifampicin treatment of Blattella germanica evidences a fecal transmission route of their gut microbiota. FEMS Microbiol Ecol 94. doi: 10.1093/femsec/fiy002
  4. Ballesteros, F.J., Martinez, V.J., Luque, B., Lacasa, L., Valor, E., y Moya, A. (2018) On the thermodynamic origin of metabolic scaling. Sci Rep 8: 1448. doi: 10.1038/s41598-018-19853-6
  5. Perez-Brocal, V., y Moya, A. (2018) The analysis of the oral DNA virome reveals which viruses are widespread and rare among healthy young adults in Valencia (Spain). PLoS One 13: e0191867. doi: 10.1371/journal.pone.0191867.
  6. Serena, C., Ceperuelo-Mallafre, V., Keiran, N., Queipo-Ortuno, M.I., Bernal, R., Gomez-Huelgas, R., Urpi-Sarda, M., Sabater, M., Perez-Brocal, V., Andres-Lacueva, C., Moya, A., Tinahones, F.J., Fernandez-Real, J.M., Vendrell, J., y Fernandez-Veledo, S. (2018) Elevated circulating levels of succinate in human obesity are linked to specific gut microbiota. ISME J 12: 1642-1657. doi: 10.1038/s41396-018-0068-2
  7. Llop, P., Latorre, A., y Moya, A. (2018) Experimental Epidemiology of Antibiotic Resistance: Looking for an Appropriate Animal Model System. Microbiol Spectr 6. doi: 10.1128/microbiolspec.MTBP-0007-2016
  8. Deusch, S., Serrano-Villar, S., Rojo, D., Martinez-Martinez, M., Bargiela, R., Vazquez-Castellanos, J.F., Sainz, T., Barbas, C., Moya, A., Moreno, S., Gosalbes, M.J., Estrada, V., Seifert, J., y Ferrer, M. (2018) Effects of HIV, antiretroviral therapy and prebiotics on the active fraction of the gut microbiota. AIDS 32: 1229-1237. doi: 10.1097/qad.0000000000001831
  9. Serrano-Villar, S., de Lagarde, M., Vazquez-Castellanos, J., Vallejo, A., Bernadino, J.I., Madrid, N., Matarranz, M., Diaz-Santiago, A., Gutierrez, C., Cabello, A., Villar-Garcia, J., Blanco, J.R., Bisbal, O., Sainz, T., Moya, A., Moreno, S., Gosalbes, M.J., y Estrada, V. (2018) Effects of immunonutrition in advanced hiv disease: A randomized placebo controlled clinical trial (Promaltia Study). Clin Infect Dis. doi: 10.1093/cid/ciy414
  10. Vazquez-Castellanos, J.F., Serrano-Villar, S., Jimenez-Hernandez, N., Soto Del Rio, M.D., Gayo, S., Rojo, D., Ferrer, M., Barbas, C., Moreno, S., Estrada, V., Rattei, T., Latorre, A., Moya, A., y Gosalbes, M.J. (2018) Interplay between gut microbiota metabolism and inflammation in HIV infection. ISME J 10. doi: 10.1038/s41396-018-0151-8
  11. Martinez-Cano, D.J., Bor, G., Moya, A., y Delaye, L. (2018) Testing the domino theory of gene loss in Buchnera aphidicola: The relevance of epistatic interactions. Life (Basel) 8. doi: 10.3390/life8020017
  12. Delaye, L., Ruiz-Ruiz, S., Calderon, E., Tarazona, S., Conesa, A., y Moya, A. (2018) Evidence of the Red-Queen Hypothesis from accelerated rates of evolution of genes involved in biotic interactions in Pneumocystis. Genome Biol Evol 10: 1596-1606. doi: 10.1093/gbe/evy116
  13. Dinleyici, E.C., Martinez-Martinez, D., Kara, A., Karbuz, A., Dalgic, N., Metin, O., Yazar, A.S., Guven, S., Kurugol, Z., Turel, O., Kucukkoc, M., Yasa, O., Eren, M., Ozen, M., Marti, J.M., C, P.G., Vandenplas, Y., y Moya, A. (2018) Time series analysis of the microbiota of children suffering from acute infectious diarrhea and their recovery after treatment. Front Microbiol 9: 1230. doi: 10.3389/fmicb.2018.01230
  14. Raimondi, S., Luciani, R., Sirangelo, T.M., Amaretti, A., Leonardi, A., Ulrici, A., Foca, G., D'Auria, G., Moya, A., Zuliani, V., Seibert, T.M., Soltoft-Jensen, J., y Rossi, M. (2018) Microbiota of sliced cooked ham packaged in modified atmosphere throughout the shelf life: Microbiota of sliced cooked ham in MAP. Int J Food Microbiol 289: 200-208. doi: 10.1016/j.ijfoodmicro.2018.09.017
  15. Rosas, T., García-Ferris, C., Domínguez-Santos, R., Llop, P., Latorre, A., Moya, A., (2018). Rifampicin treatment of Blattella germanica evidences a fecal transmission route of their gut microbiota. FEMS Microbiol Ecol 94. doi: 10.1093/femsec/fiy002
  16. Amaretti, A., Gozzoli, C., Simone, M., Raimondi, S., Righini, L., Pérez-Brocal, V., García-López, R., Moya, A., Rossi, M. (2019). Profiling of Protein Degraders in Cultures of Human Gut Microbiota. Front Microbiol 10, 2614. doi: 10.3389/fmicb.2019.02614
  17. Jiménez-Hernández, N., Serrano-Villar, S., Domingo, A., Pons, X., Artacho, A., Estrada, V., Moya, A., Gosalbes, M.J. (2019). Modulation of Saliva Microbiota through Prebiotic Intervention in HIV-Infected Individuals. Nutrients 11, E1346. doi: 10.3390/nu11061346
  18. Allaw, M., Manca, M.L., Caddeo, C., Recio, M.C., Pérez-Brocal, V., Moya, A., Fernàndez-Busquets, X., Manconi, M. (2020). Advanced strategy to exploit wine-making waste by manufacturing antioxidant and prebiotic fibre-enriched vesicles for intestinal health. Colloids Surf B Biointerfaces 193, 111146. doi: 10.1016/j.colsurfb.2020.111146
  19. Arnoriaga-Rodríguez, M., Mayneris-Perxachs, J., Burokas, A., Contreras-Rodríguez, O., Blasco, G., Coll, C., Biarnés, C., Miranda-Olivos, R., Latorre, J., Moreno-Navarrete, J.-M., Castells-Nobau, A., Sabater, M., Palomo-Buitrago, M.E., Puig, J., Pedraza, S., Gich, J., Pérez-Brocal, V., Ricart, W., Moya, A., Fernández-Real, X., Ramió-Torrentà, L., Pamplona, R., Sol, J., Jové, M., Portero-Otin, M., Maldonado, R., Fernández-Real, J.M. (2020a). Obesity Impairs Short-Term and Working Memory through Gut Microbial Metabolism of Aromatic Amino Acids. Cell Metab 32, 548-560.e7. doi: 10.1016/j.cmet.2020.09.002
  20. Arnoriaga-Rodríguez, M., Mayneris-Perxachs, J., Burokas, A., Pérez-Brocal, V., Moya, A., Portero-Otin, M., Ricart, W., Maldonado, R., Fernández-Real, J.-M. (2020)b. Gut bacterial ClpB-like gene function is associated with decreased body weight and a characteristic microbiota profile. Microbiome 8, 59. doi: 10.1186/s40168-020-00837-6
  21. Delaye, L., Vargas, C., Latorre, A., Moya, A. (2020). Inferring Horizontal Gene Transfer with DarkHorse, Phylomizer, and ETE Toolkits. Methods Mol Biol 2075, 355–369. doi: 10.1007/978-1-4939-9877-7_25
  22. Džunková, M., Lipták, R., Vlková, B., Gardlík, R., Čierny, M., Moya, A., Celec, P. (2020a). Salivary microbiome composition changes after bariatric surgery. Sci Rep 10, 20086. doi: 10.1038/s41598-020-76991-6
  23. Džunková, M., Moya, A., Chen, X., Kelly, C., D’Auria, G. (2020b). Detection of mixed-strain infections by FACS and ultra-low input genome sequencing. Gut Microbes 11, 305–309. doi: 10.1080/19490976.2018.1526578
  24. González-Serrano, F., Pérez-Cobas, A.E., Rosas, T., Baixeras, J., Latorre, A., Moya, A. (2020). The Gut Microbiota Composition of the Moth Brithys crini Reflects Insect Metamorphosis. Microb Ecol 79, 960–970. doi: 10.1007/s00248-019-01460-1
  25. Lamelas, A., Desgarennes, D., López-Lima, D., Villain, L., Alonso-Sánchez, A., Artacho, A., Latorre, A., Moya, A., Carrión, G. (2020). The Bacterial Microbiome of Meloidogyne-Based Disease Complex in Coffee and Tomato. Front Plant Sci 11, 136. doi: 10.3389/fpls.2020.00136
  26. Mayneris-Perxachs, J., Arnoriaga-Rodríguez, M., Luque-Córdoba, D., Priego-Capote, F., Pérez-Brocal, V., Moya, A., Burokas, A., Maldonado, R., Fernández-Real, J.-M. (2020). Gut microbiota steroid sexual dimorphism and its impact on gonadal steroids: influences of obesity and menopausal status. Microbiome 8, 136. doi: 10.1186/s40168-020-00913-x
  27. Moya, A., Oliver, J.L., Verdú, M., Delaye, L., Arnau, V., Bernaola-Galván, P., de la Fuente, R., Díaz, W., Gómez-Martín, C., González, F.M., Latorre, A., Lebrón, R., Román-Roldán, R. (2020a). Driven progressive evolution of genome sequence complexity in Cyanobacteria. Sci Rep 10, 19073. doi: 10.1038/s41598-020-76014-4
  28. Moya, A., Ruiz-Ruiz, S., Ferrer, M. (2020b). Bacterial taxa decoupling with ageing. Aging (Albany NY) 12, 15878–15879. doi: 10.18632/aging.104031
  29. Pérez-Brocal, V., Magne, F., Ruiz-Ruiz, S., Ponce, C.A., Bustamante, R., Martin, V.S., Gutierrez, M., Gatti, G., Vargas, S.L., Moya, A. (2020). Optimized DNA extraction and purification method for characterization of bacterial and fungal communities in lung tissue samples. Sci Rep 10, 17377. doi: 10.1038/s41598-020-74137-2
  30. Reyes-Prieto, M., Vargas-Chávez, C., Llabrés, M., Palmer, P., Latorre, A., Moya, A. (2020). An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms. Database (Oxford) 2020, baz160. doi: 10.1093/database/baz160
  31. Debesa-Tur, G., Pérez-Brocal, V., Ruiz-Ruiz, S., Castillejo, A., Latorre, A., Soto, J.L., Moya, A. (2021). Metagenomic analysis of formalin-fixed paraffin-embedded tumor and normal mucosa reveals differences in the microbiome of colorectal cancer patients. Sci Rep 11, 391. doi: 10.1038/s41598-020-79874-y
  32. Dinleyici, M., Pérez-Brocal, V., Arslanoglu, S., Aydemir, O., Sevuk Ozumut, S., Tekin, N., Vandenplas, Y., Moya, A., Dinleyici, E.C. (2021). Human Milk Virome Analysis: Changing Pattern Regarding Mode of Delivery, Birth Weight, and Lactational Stage. Nutrients 13, 1779. doi: 10.3390/nu13061779
  33. Falgueras-Cano, J., Falgueras-Cano, J.-A., Moya, A. (2021). A Study of the Coevolution of Digital Organisms with an Evolutionary Cellular Automaton. Biology (Basel) 10, 1147. doi: 10.3390/biology10111147
  34. Parisot, N., Vargas-Chávez, C., Goubert, C., Baa-Puyoulet, P., Balmand, S., Beranger, L., Blanc, C., Bonnamour, A., Boulesteix, M., Burlet, N., Calevro, F., Callaerts, P., Chancy, T., Charles, H., Colella, S., Da Silva Barbosa, A., Dell’Aglio, E., Di Genova, A., Febvay, G., Gabaldón, T., Galvão Ferrarini, M., Gerber, A., Gillet, B., Hubley, R., Hughes, S., Jacquin-Joly, E., Maire, J., Marcet-Houben, M., Masson, F., Meslin, C., Montagné, N., Moya, A., Ribeiro de Vasconcelos, A.T., Richard, G., Rosen, J., Sagot, M.-F., Smit, A.F.A., Storer, J.M., Vincent-Monegat, C., Vallier, A., Vigneron, A., Zaidman-Rémy, A., Zamoum, W., Vieira, C., Rebollo, R., Latorre, A., Heddi, A. (2021). The transposable element-rich genome of the cereal pest Sitophilus oryzae. BMC Biol 19, 241. doi: 10.1186/s12915-021-01158-2
  35. Rodríguez-Peña, M.-M., Astiarraga, B., Seco, J., Ceperuelo-Mallafré, V., Caballé, A., Pérez-Brocal, V., Attolini, C.S.-O., Moya, A., Llauradó, G., Megía, A., Pellitero, S., Vilarrasa, N., Fernández-Veledo, S., Vendrell, J. (2021). Changes in glucagon-like peptide 1 and 2 levels in people with obesity after a diet-induced weight-loss intervention are related to a specific microbiota signature: A prospective cohort study. Clin Transl Med 11, e575. doi: 10.1002/ctm2.575
  36. Serrano-Villar, S., Talavera-Rodríguez, A., Gosalbes, M.J., Madrid, N., Pérez-Molina, J.A., Elliott, R.J., Navia, B., Lanza, V.F., Vallejo, A., Osman, M., Dronda, F., Budree, S., Zamora, J., Gutiérrez, C., Manzano, M., Vivancos, M.J., Ron, R., Martínez-Sanz, J., Herrera, S., Ansa, U., Moya, A., Moreno, S. (2021). Fecal microbiota transplantation in HIV: A pilot placebo-controlled study. Nat Commun 12, 1139. doi: 10.1038/s41467-021-21472-1
  37. Yalcin, S.S., Aksu, T., Kuskonmaz, B., Ozbek, N.Y., Pérez-Brocal, V., Celik, M., Uckan Cetinkaya, D., Moya, A., Dinleyici, E.C. (2022). Intestinal mycobiota composition and changes in children with thalassemia who underwent allogeneic hematopoietic stem cell transplantation. Pediatr Blood Cancer 69, e29411. doi: 10.1002/pbc.29411
Actualised 14/01/2022
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